From: Genotyping HIV-1 and HCV Strains by a Combinatorial DNA Melting Assay (COMA)
Subtype a | Name (GenBank accession number) | Reference Pool c |
---|---|---|
A | UG271 (8), UG273 (L22957), UG275 (L22951), UG278 (8), DJ263 (L22941), UG276 (8), UG13655,b TZ940990 (U61875), TZ940992 (U61878), KE943509,b TX940996 (U61876), KE943511,b TZ941004 (U61877), KE943505b | I |
B | POC367 (8), POC369 (8), POC370 (8), EG147 (8), POC366 (8), TH942705 (U22552), TH942728 (U22600), TH942706 (U22554), TH942664 (U22581), TH942698 (U22543), TH942711 (U22560), TH942670 (U22587), TH942699 (U22604), TH942723 (U22595) | I |
C | SE145 (L22946), DJ259 (L22940), DJ260 (8), BR15 (M74984), MW6510 (L15733), MW12199 (L15721), MW12233 (L15730), MW12205 (L15723), MW6506 (L15731), MW12225 (L15727), MW6512 (L15734), MW6518 (L15735), MW12203 (L15722) | I |
D | UG272 (8), UG274 (L22950), UG267 (8), UG269 (L22949), SE365 (L22945), UG279 (8), UG35 (8), UG24 (8), TAN372 (8), UG5428,b UG13671,b KE943513,b KE943384,b KE943382b | I |
E | TH942095 (U22611), TH942123 (U22557), TH942113 (U22625), TH942125 (U22561), TH942093 (U22609), BZ162 (L11751), BZ163 (L22946) | I |
F | BZ126 (L22082), RO18556,b RO18572,b RO18596,b RO18578b | I |
A | KE943507b | II |
B | TH942700 (U22545), TH942724 (U22596) | II |
C | MW12227 (L15728) | II |
E | TH942115 (U22542), TH942127 (U22567), TH942129 (U22575), TH942111 (U22624), TH942105 (U22617), TH942686 (U22604), TH942121 (U22553), TH942117 (U22548), TH942097 (U22612) | II |
F | RO18558,b RO18576,b RO18568,b RO18584,b RO18552,b RO18570,b RO18594b | II |
A | UG29 (8), UG31 (L34667) | III |
B | BZ195 (8) | III |
C | DJ261 (8), DJ262 (8) | III |
D | TAN371 (8), UG277 (8) | III |
A | UG13673,b UG13675,b UG13669b | IV |
C | MW6508 (L15732), MW12215 (L15727), MW6514b | IV |
D | TZ940994 (U61879) | IV |
A | 92UG037 (U09127), 92RW020 (U08794) | V |
B | 91US005 (U27434), 92HT953 (U08444), 92HT954 (U08445), 91HT651 (U08441), 92HT596 (U08446), 91HT652 (U08443), 92HT599 (U08447), 92US716 (U08453), 92US712 (U08449), 92US715 (U08451), 92US714 (U08448), 92US714 (U08450) | V |
C | 93MW960 (U08454), 93MW959 (U08453), 93MW956 (U08455) | V |
D | 92UG021 (U27399) | V |
E | 93TH975 (U08457), 93TH966 (U08456), 93TH975 (U08458) | V |
F | 93BR019 (U27401), 93BR020 (U27408) | V |
G | 92RU131 (U27445) | V |