Table 2 The list of variants localized to genes associated with BMI in the GIANT cohort which associate with GWG
SNP ID | chr | MAF [%] | B | p-value | Gene/nearest gene | Localization/type |
|---|---|---|---|---|---|---|
rs11465293 | 7 | 5.7 | 4.46 | 3.18E−06 | CCL24 | Missense |
rs1978202 | 7 | 8.7 | 3.51 | 4.53E−06 | CCL26 | Intergenic |
rs9347707 | 6 | 35.1 | 1.94 | 4.74E−05 | PACRG | Intron |
rs72849841 | 17 | 17.1 | − 2.19 | 1.25E−04 | RNF213 | Missense |
rs11807240 | 1 | 10.4 | 2.58 | 1.61E−04 | FUBP1 | Intron |
rs9659938 | 1 | 10.4 | 2.58 | 1.61E−04 | NEXN204 | Intron |
rs13340504 | 7 | 14.4 | 2.32 | 2.29E−04 | CCL24 | Intergenic |
rs1541725 | 2 | 46.0 | 1.61 | 3.95E−04 | AC009502.4 | Intergenic |
rs2136682 | 1 | 9.3 | 2.54 | 4.25E−04 | GIPC2 | Intron |
rs4329088 | 6 | 46.2 | 1.63 | 4.33E−04 | PACRG | Intron |
rs886131 | 12 | 41.0 | − 1.60 | 4.78E−04 | RPL29P25 | Noncoding transcript |
rs11037234 | 11 | 33.1 | 1.66 | 5.34E−04 | RP11-111A24.2 | Intergenic |
rs8122282 | 20 | 45.7 | − 1.49 | 6.44E−04 | C20orf166 | Intron |
rs4808209 | 17 | 6.9 | 3.00 | 7.13E−04 | ZNF101 | Start loss |
rs9352745 | 6 | 26.1 | 1.70 | 7.27E−04 | LCA5 | Intron |
rs876373 | 12 | 43.4 | 1.50 | 7.29E−04 | RPL29P25 | Intron |
rs6062267 | 20 | 45.3 | − 1.49 | 7.94E−04 | C20orf166 | Intron |
rs7961894 | 12 | 8.5 | 2.75 | 8.88E−04 | WDR66 | Intron |
rs7564856 | 2 | 34.5 | − 1.59 | 9.62E−04 | SPEG | Intergenic |