Table 3 The list of variants localized to genes associated with BMI in T2D-GENES and ARIC cohorts which associate with GWG
SNP ID | chr | MAF [%] | B | p-value | Gene/nearest gene | Localization/type |
|---|---|---|---|---|---|---|
rs9690213 | 7 | 18.4 | 2.66 | 9.86E−07 | PODXL | Regulatory region variant |
rs11465293 | 7 | 5.7 | 4.46 | 3.17E−06 | CCL24 | Missense |
rs9393623 | 6 | 31.0 | 2.18 | 4.11E−06 | CMAHP | Intron |
rs4796675 | 17 | 22.2 | 2.38 | 4.40E−06 | LINC00974 | Noncoding transcript exon variant |
rs1978202 | 7 | 8.7 | 3.51 | 4.53E−06 | CCL26 | Intergenic |
rs8080053 | 17 | 23.1 | 2.33 | 5.57E−06 | LINC00974 | Noncoding transcript exon variant |
rs12534221 | 7 | 17.7 | 2.55 | 5.85E−06 | PODXL | Intergenic |
rs6747327 | 2 | 35.6 | 2.04 | 1.35E−05 | CAPN13 | Intron |
rs4742339 | 9 | 37.8 | 1.97 | 2.97E−05 | KANK1 | Intergenic |
rs11714248 | 3 | 43.0 | − 1.86 | 4.40E−05 | TRANK1 | Intron |
rs9347707 | 6 | 35.1 | 1.94 | 4.74E−05 | PACRG | Intron |
rs1398095 | 3 | 25.6 | 2.15 | 4.85E−05 | CAPDS | Intron |
rs9940705 | 16 | 6.2 | 3.61 | 6.91E−05 | FAM92B | Intron |
rs2421052 | 5 | 43.1 | − 1.86 | 7.63E−05 | AC008691 | Intron |
rs6815557 | 4 | 39.2 | 1.82 | 8.24E−05 | LOC107986225 | Intergenic |
rs12788347 | 11 | 10.8 | 2.92 | 8.72E−05 | AL137224 | Intron |
rs11235519 | 11 | 24.2 | − 2.02 | 8.93E−05 | AP005019.4 | Intergenic |
rs6546217 | 2 | 11.7 | 2.64 | 9.89E−05 | AC118345.1 | Intergenic |
rs7609526 | 2 | 11.1 | 2.68 | 9.97E−05 | AC118345.1 | Intergenic |