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Table 1 L–R differential methylation of ion channels in in-vivo and in-silico studies

From: When left does not seem right: epigenetic and bioelectric differences between left- and right-sided breast cancer

More methylated right

More methylated left

Gene symbol*

Channel function

Gene symbol*

Channel function

Ion channels from in-vivo assays

 CHRNE

Depolarization

ASIC2

Depolarization

 HTR1A

Depolarization

CACNA1A

Depolarization

 PIEZO2

Depolarization

CACNA2D2

Depolarization

 RYR3

Depolarization

CATSPERD

Depolarization

 TRPC7

Depolarization

PKD1L1

Depolarization

 TRPM8

Depolarization

TRPM4

Depolarization

 ANO2

Hyperpolarization

ANO3

Hyperpolarization

 ATP1A3

Hyperpolarization

ANO5

Hyperpolarization

 ATP6V1C2

Hyperpolarization

CLCN1

Hyperpolarization

 ATP6V1H

Hyperpolarization

CLIC5

Hyperpolarization

 GABBR1

Hyperpolarization

GABBR2

Hyperpolarization

 KCNA7

Hyperpolarization

GABRA5

Hyperpolarization

 KCNB1

Hyperpolarization

GABRD

Hyperpolarization

  

GABRG1

Hyperpolarization

  

KCNH2

Hyperpolarization

  

KCNIP3

Hyperpolarization

  

KCNJ18

Hyperpolarization

  

KCNK9

Hyperpolarization

  

KCNN1

Hyperpolarization

  

VDAC2

Hyperpolarization

Ion channels from in-silico assays

 CACNA1D

Depolarization

CACNA2D2

Depolarization

 CACNA1H

Depolarization

CACNA2D4

Depolarization

 CACNA1I

Depolarization

CHRNA1

Depolarization

 CACNB2

Depolarization

CNGA1

Depolarization

 CACNG4

Depolarization

HCN1

Depolarization

 CACNG6

Depolarization

P2RX4

Depolarization

 CHRNA6

Depolarization

PKD2

Depolarization

 CHRNB1

Depolarization

RYR1

Depolarization

 CHRNB2

Depolarization

SCN11A

Depolarization

 CNGA3

Depolarization

SCNN1A

Depolarization

 GRIA1

Depolarization

TRPM3

Depolarization

 HVCN1

Depolarization

CFTR

Hyperpolarization

 LRRC8D

Depolarization

CLCN1

Hyperpolarization

 LRRC8E

Depolarization

CLCNKB

Hyperpolarization

 MCOLN2

Depolarization

KCNA1

Hyperpolarization

 MCOLN3

Depolarization

KCNA5

Hyperpolarization

 PKD2L2

Depolarization

KCNC3

Hyperpolarization

 SCN3B

Depolarization

KCNH7

Hyperpolarization

 SCN9A

Depolarization

KCNH8

Hyperpolarization

 SCNN1G

Depolarization

KCNJ9

Hyperpolarization

 TRPA1

Depolarization

KCNMA1

Hyperpolarization

 TRPC2

Depolarization

KCNS2

Hyperpolarization

 TRPC3

Depolarization

  

 TRPM2

Depolarization

  

 TRPM6

Depolarization

  

 TRPV3

Depolarization

  

 TRPV4

Depolarization

  

 TRPV6

Depolarization

  

 CLIC3

Hyperpolarization

  

 GABRA2

Hyperpolarization

  

 GABRG1

Hyperpolarization

  

 GABRP

Hyperpolarization

  

 GABRR1

Hyperpolarization

  

 GLRA3

Hyperpolarization

  

 GLRB

Hyperpolarization

  

 KCNA2

Hyperpolarization

  

 KCNA6

Hyperpolarization

  

 KCNA7

Hyperpolarization

  

 KCNG1

Hyperpolarization

  

 KCNH1

Hyperpolarization

  

 KCNH4

Hyperpolarization

  

 KCNH6

Hyperpolarization

  

 KCNJ15

Hyperpolarization

  

 KCNJ2

Hyperpolarization

  

 KCNJ5

Hyperpolarization

  

 KCNJ6

Hyperpolarization

  

 KCNK3

Hyperpolarization

  

 KCNK4

Hyperpolarization

  

 KCNK5

Hyperpolarization

  

 KCNN4

Hyperpolarization

  

 KCNQ3

Hyperpolarization

  

 KCNQ4

Hyperpolarization

  

 KCNS1

Hyperpolarization

  

 KCNS3

Hyperpolarization

  

 KCNT2

Hyperpolarization

  
  1. *HUGO Gene Nomenclature Committee (HGNC)