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Table 3 Gene expression analysis by DNA damage signaling pathway-based PCR array

From: Rad1 attenuates DNA double-strand breaks and cell cycle arrest in type II alveolar epithelial cells of rats with bronchopulmonary dysplasia

Gene bank

Symbol

Gene function

Fold regulation model/control

p value

Up

Down

NM_012514

Brca1

ATM / ATR signaling

1.55

 

0.045666

NM_001107396

Cdc25c

Cell cycle

3.13

 

0.005991

NM_080782

Cdkn1a

Cell cycle

3.53

 

0.002586

NM_001106201

Dclre1a

Nucleotide excision repair

1.60

 

0.008727

NM_001108455

Fanca

Fanconi anemia pathway

1.63

 

0.031054

NM_001001719

Fancd2

Fanconi Anemia pathway

1.66

 

0.029674

NM_001077640

Gadd45g

Apoptosis

2.05

 

0.016492

NM_012861

Mgmt

DNA repair

3.30

 

0.002173

NM_012557

Fancc

Fanconi anemia pathway

 

− 1.67

0.021384

NM_024134

Ddit3

Apoptosis

 

− 1.70

0.001880

XM_001059437

Mbd4

Base excision repair

 

− 1.80

0.009073

XM_001065837

Msh3

Mismatch repair

 

− 2.24

0.011564

NM_001105728

Nthl1

Base excision repair

 

− 1.63

0.027792

NM_001009535

Pms1

Mismatch repair

 

− 1.61

0.000344

NM_001105825

Ppm1d

Negative feedback regulation of DNA damage repair

 

− 1.51

0.021103

NM_001106419

Rad1

Double-strand break repair

 

− 1.90

0.000737

NM_001106617

Rad52

Double-strand break repair

 

− 1.77

0.003632

NM_031583

Smc3

Double-strand break repair

 

− 1.59

0.006429

XM_214361

Wrn

Base excision repair

 

− 1.60

0.028017

  1. p value of < 0.05, fold difference > 1.5
  2. Relative expression profiles of genes associated with the DNA damage signaling pathway in model and control rat lung tissues. Genes were considered to be differentially expressed if there was a > 1.5-fold difference in gene expression, with a threshold p value of < 0.05