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Table 2 263 transcripts differentially expressed In AS cells as compared with control samples. Transcripts are ordered by their Apert-to-control ratios (Log 2).

From: Apert p.Ser252Trp Mutation in FGFR2 Alters Osteogenic Potential and Gene Expression of Cranial Periosteal Cells

Gene (Official Symbol) Gene name Accession number SNRa P value Apert-to-control Ratio (Log2) x-fold down-regulated in Apert
DKFZp434B 1231 b eEF1A2 binding protein NM_178275.3 −0.86 0.010 −2.66 6.31
TNNT1 c troponin T type 1 (skeletal, slow) F36108.1 −0.662 0.017 −2.45 5.46
TNXB b tenascin XB NM_032470.2 −0.769 0.015 −2.32 4.98
CYHR1 b cysteine/histidine-rich 1 AB007965.1 −1.013 0.010 −2.21 4.62
RTN4RL 1 b reticulon 4 receptor-like 1 AL834409.1 −0.812 0.023 −1.83 3.57
CCRL1 chemokine (C-C motif) receptor-like 1 NM_016557.2 −0.65 0.035 −1.77 3.42
NISC_np07a06y1 NICHD_HS_Ut1 NISC_np07a06yl NICHD_ CB215524.1 HS_Ut1 cDNA clone IMAGE:5936938 5′ −0.422 0.047 −1.76 3.39
PCNXL2 b pecanex-like 2 (Drosophila) NM_014801.2 −0.773 0.023 −1.75 3.36
CFB complement factor B NM_001710.3 −0.678 0.027 −1.74 3.34
DDIT4 b DNA-damage-inducible transcript 4 NM_019058.1 −0.564 0.022 −1.71 3.28
RARRES3 b retinoic acid receptor responder (tazarotene induced) 3 NM_004585.2 −0.773 0.022 −1.64 3.12
ZC3H12A zinc finger CCCH-type containing 12A NM_025079.1 −0.499 0.047 −1.62 3.08
PIK3C2B c phosphoinositide-3-kinase, class 2, β polypeptide NM_002646.2 −0.903 0.004 −1.54 2.91
TP53I11 tumor protein p53 inducible protein ll BC045666.1 −0.702 0.026 −1.48 2.79
GBP2 guanylate binding protein 2, interferon-inducible NM_004120.3 −0.689 0.031 −1.43 2.69
ChGn c chondroitin betal,4 N-acetylgalactosaminyltransferase NM_018371.3 −0.819 0.015 −1.42 2.68
ZNF385 b zinc finger protein 385 NM_015481.1 −0.955 0.011 −1.38 2.61
UI-E-CQ1-aew-i-06-0-UIr1 UI-E-CQ1 UI-E-CQ1-aew-i-06-0-UIr1 UI-E-CQ1 cDNA clone UI-E-CQ1-aew-i-06-0-UI 5′ BM695626.1 −0.661 0.042 −1.37 2.59
PDGFRA platelet-derived growth factor receptor, α polypeptide NM_006206.2 −0.653 0.045 −1.34 2.53
LRRC17 b leucine rich repeat containing 17 NM_005824.1 −0.643 0.039 −1.25 2.38
yr27d04r1 yr27d04r1 Soares fetal liver spleen 1NFLS cDNA clone IMAGE:206503 5′ H59349.1 −0.708 0.039 −1.25 2.38
MGC:71335 b cDNA clone MGC:71335 IMAGE:6088873 BC067086.1 −0.825 0.009 −1.25 2.37
FLJ43880 c cDNA FLJ43880 fis, clone TESTI4009022 AK125868.1 −0.796 0.017 −1.24 2.36
ADAM33 ADAM metallopeptidase domain 33 NM_153202.1 −0.709 0.027 −1.22 2.33
RC6-HT0840-150800-022-D11 HT0840 RC6-HT0840-150800-022-D11 HT0840 Homo sapiens cDNA BE719128.1 −0.678 0.031 −1.22 2.33
FXYD1 FXYD domain containing ion transport regulator 1 (phospholemman) NM_021902.2 −0.578 0.044 −1.20 2.29
MAF v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian) NM_005360.2 −0.568 0.044 −1.19 2.29
ABI3BP c ABI gene family, member 3 (NESH) binding protein NM_015429.2 −0.705 0.012 −1.17 2.26
UI-E-DW1-ahc-b-11-0-UIr1 UI-E-DW1 c UI-E-DW1-ahc-b-11-0-UIr1 UI-E-DW1 cDNA clone UI-E-DW1-ahc-b-11-0-UI 5′ BM712072.1 −0.854 0.008 −1.14 2.21
MTSS1 b metastasis suppressor 1 NM_014751.2 −0.731 0.009 −1.14 2.20
CLDN15 b claudin 15 NM_014343.1 −0.714 0.022 −1.13 2.19
GANAB glucosidase, alpha; neutral AB NM_198334.1 −0.719 0.020 −1.13 2.19
C1QTNF1 c C1q and tumor necrosis factor related protein 1 NM_030968.2 −0.672 0.017 −1.13 2.18
ATF3 activating transcription factor 3 NM_004024.2 −0.619 0.049 −1.10 2.14
C17orf58 c chromosome 17 open reading frame 58 NM_181655.1 −0.813 0.007 −1.10 2.14
P2RY6 c pyrimidinergic receptor P2Y, G-protein coupled, 6 NM_004154.3 −0.814 0.021 −1.08 2.12
ADAM8 c a disintegrin and metalloproteinase domain 8 NM_001109.1 −0.628 0.044 −1.06 2.08
PNRC1 proline-rich nuclear receptor coactivator 1 NM_006813.1 −0.902 0.008 −1.05 2.07
FLJ23438 b cDNA: FLJ23438 fis, clone HRC13275 AK027091.1 −0.738 0.016 −1.04 2.06
BTN3A3 c butyrophilin, subfamily 3, member A3 NM_197974.1 −0.833 0.009 −1.03 2.05
UI-H-EU0-azp-a-24-0-UUs1 NCI_CGAP_Car1 b UI-H-EU0-azp-a-24-0-UIs1 NCI_CGAP_Car1 cDNA clone IMAGE: 5851679 3′ BQ181011.1 −0.716 0.009 −1.01 2.01
CREB5 b cAMP responsive element binding protein 5 NM_004904.1 −0.9 0.010 −1.00 2.00
HLA-G HLA-G histocompatibility antigen, class I, G NM_002127.3 −0.721 0.028 −0.99 1.99
MATN2 matrilin 2 NM_030583.1 −0.743 0.027 −0.96 1.95
HHLA2 HERV-H LTR-associating 2 NM_007072.2 −0.488 0.024 −0.95 1.93
HLA-F major histocompatibility complex, class I, F NM_018950.1 −0.619 0.039 −0.95 1.93
TXNIP thioredoxin interacting protein NM_006472.1 −0.604 0.034 −0.94 1.92
KLF11 Kruppel-like factor 11 NM_003597.4 −0.493 0.039 −0.92 1.89
ARID5A AT rich interactive domain 5A (MRF1-like) NM_006673.2 −0.526 0.042 −0.92 1.89
PERP PERP, TP53 apoptosis effector NM_022121.2 −0.602 0.042 −0.92 1.89
HHLA1 HERV-H LTR-associating 1 NM_005712.1 −0.661 0.031 −0.92 1.89
GYPC b glycophorin C (Gerbich blood group) NM_002101.3 −0.578 0.046 −0.91 1.88
NUCB1 nucleobindin 1 NM_006184.3 −0.618 0.026 −0.89 1.86
LGALS3BP b lectin, galactoside-binding, soluble, 3 binding protein NM_005567.2 −0.784 0.014 −0.89 1.85
FLJ20099 b cDNA FLJ20099 fis, clone COL04544 AK000106.1 −0.711 0.023 −0.89 1.85
TMEM142C b transmembrane protein 142C NM_152288.1 −0.803 0.011 −0.87 1.83
ATXN2L ataxin 2-like NM_007245.2 −0.596 0.046 −0.87 1.83
PAQR6 b progestin and adipoQ receptor family member VI NM_024897.2 −0.63 0.040 −0.87 1.83
SPTBN1 spectrin, beta, non-erythrocytic 1 (SPTBN1) NM_003128.1 −0.62 0.049 −0.87 1.83
MGC15875 b hypothetical protein MGC15875 (MGC15875) NM_032921.1 −0.894 0.013 −0.86 1.81
MAPK8IP1 mitogen-activated protein kinase 8 interacting protein 1 NM_005456.2 −0.642 0.037 −0.86 1.81
ANKZF1 ankyrin repeat and zinc finger domain containing 1 NM_018089.1 −0.673 0.036 −0.85 1.81
CCBE1 collagen and calcium binding EGF domains 1 NM_133459.1 −0.602 0.034 −0.85 1.81
DKFZp779O 1626 mRNA; cDNA DKFZp779O1626 (from clone DKFZp779O1626) BX648538.1 −0.676 0.027 −0.83 1.78
CA12 carbonic anhydrase XII AK000158.1 −0.612 0.040 −0.83 1.78
NFIL3 b nuclear factor, interleukin 3 regulated NM_005384.1 −0.803 0.012 −0.83 1.77
IFITM3 interferon induced transmembrane protein 3 (1-8U) NM_021034.1 −0.604 0.033 −0.83 1.77
SLC27A1 solute carrier family 27 (fatty acid transporter), member 1 NM_198580.1 −0.621 0.047 −0.81 1.75
LAMP1 lysosomal-associated membrane protein 1 NM_005561.2 −0.648 0.037 −0.80 1.74
BCL3 B-cell CLL/lymphoma 3 NM_005178.2 −0.671 0.039 −0.79 1.73
R15896ya 47b07.r1 R15896 ya47b07.r1 Soares infant brain 1NIB cDNA clone IMAGE:53125 5′ similar to SP:S37009 S37009 TRANSPOSASE — ALMOND; R15896.1 −0.645 0.037 −0.79 1.73
ZFP64 b zinc finger protein 64 homolog (mouse) NM_018197.2 −0.795 0.017 −0.78 1.72
SWAP-70 b SWAP-70 protein AB014540.1 −0.708 0.028 −0.77 1.71
P2RX4 purinergic receptor P2X, ligand-gated ion channel, 4 NM_002560.2 −0.69 0.032 −0.77 1.71
BMP1 bone morphogenetic protein 1 (BMP1) NM_006129.2 −0.598 0.048 −0.76 1.69
SLC25A37 solute carrier family 25, member 37 NM_016612.1 −0.607 0.039 −0.75 1.68
NUB1 b negative regulator of ubiquitin-like proteins 1 NM_016118.3 −0.68 0.011 −0.75 1.68
ACADS acyl-Coenzyme A dehydrogenase, C-2 to C-3 short chain NM_000017.1 −0.669 0.046 −0.74 1.67
RELB v-rel reticuloendotheliosis viral oncogene homolog B, nuclear factor of kappa light polypeptide gene enhancer in B-cells 3 (avian) NM_006509.2 −0.682 0.033 −0.74 1.67
PPARA b peroxisome proliferative activated receptor, α NM_032644.1 −0.753 0.009 −0.74 1.67
ELL3 b elongation factor RNA polymerase II-like 3 NM_025165.1 −0.791 0.006 −0.74 1.67
BCL6 c B-cell CLL/lymphoma 6 (zinc finger protein 51) NM_001706.2 −0.819 0.013 −0.74 1.67
PYGL c phosphorylase, glycogen; liver (Hers disease, glycogen storage disease type VI) NM_002863.2 −0.804 0.016 −0.74 1.67
cDNA clone fs01a035′ fs01a03y1 Human Lens cDNA (Normalized): fs cDNA clone fs01a03 5′ CD673362.1 −0.615 0.030 −0.73 1.66
602156641F1 NH_MGC _83 602156641F1 NIH_MGC_83 cDNA clone IMAGE:4297258 5′ BF681513.1 −0.597 0.037 −0.73 1.66
CSNK2A1 casein kinase 2, α 1 polypeptide NM_177560.2 −0.693 0.030 −0.73 1.66
KIAA0082 KIAA0082 NM_015050.1 −0.945 0.010 −0.72 1.65
UI-E-DW0-agh-c-03-0-UIr1 UI-E-DW0 c UI-E-DW0-agh-c-03-0-UIr1 UI-E-DW0 cDNA clone UI-E-DW0-agh-c-03-0-UI 5′ BM706230.1 −0.714 0.024 −0.72 1.65
CNTNAP1 contactin associated protein 1 NM_003632.1 −0.628 0.041 −0.72 1.64
SYNGR1 b synaptogyrin 1 NM_004711.3 −0.635 0.043 −0.71 1.64
ING4 inhibitor of growth family, member 4 NM_198287.1 −0.586 0.044 −0.69 1.62
RBM5 b RNA binding motif protein 5 NM_005778.1 −0.71 0.024 −0.69 1.61
FLJ34274 cDNA FLJ34274 fis, clone FEBRA2003327 AK091593.1 −0.618 0.044 −0.68 1.60
FAM113A b family with sequence similarity 113, member A NM_022760.3 −0.796 0.015 −0.68 1.60
MAP3K6 mitogen-activated protein kinase kinase kinase 6 NM_004672.3 −0.584 0.041 −0.67 1.59
FLJ14360 hypothetical protein FLJ14360 NM_032775.2 −0.638 0.030 −0.67 1.59
B4GALT7 b xylosylprotein β 1,4-galactosyltransferase, polypeptide 7 (galactosyltransferase I) NM_007255.1 −0.76 0.026 −0.66 1.57
CASP7 b caspase 7, apoptosis-related cysteine peptidase NM_001227.2 −0.637 0.023 −0.65 1.57
IXL b intersex-like (Drosophila) AL137304.1 −0.662 0.031 −0.65 1.57
RHBDF2 rhomboid-like protein 6 NM_024599.2 −0.636 0.030 −0.65 1.57
UCN urocortin NM_003353.2 −0.625 0.044 −0.65 1.57
FLRT2 fibronectin leucine rich transmembrane protein 2 NM_013231.3 −0.595 0.042 −0.64 1.56
FLJ45129 cDNA FLJ45129 fis, clone BRAWH3037394 AK127072.1 −0.582 0.048 −0.63 1.55
LKAP c limkain b1 NM_014647.1 −0.693 0.012 −0.63 1.55
yj34b04r1 b yj34b04r1 Soares placenta Nb2HP cDNA clone IMAGE:150607 5′ H02050.1 −0.722 0.017 −0.62 1.54
HECA b headcase homolog (Drosophila) NM_016217.1 −0.629 0.047 −0.62 1.54
BMP1 b bone morphogenetic protein 1 NM_006129.2 −0.763 0.024 −0.62 1.54
601194047F1 NIH_MGC_7 601194047F1 NIH_MGC_7 cDNA clone IMAGE:3537995 5′ BE264943.1 −0.699 0.048 −0.62 1.54
TNIP2 b TNFAIP3 interacting protein 2 NM_024309.2 −0.95 0.008 −0.62 1.54
ZNF688 zinc finger protein 688 NM_145271.2 −0.669 0.026 −0.61 1.53
MITF microphthalmia-associated transcription factor NM_006722.1 −0.62 0.042 −0.60 1.51
FLJ45204 b cDNA FLJ45204 fis, clone BRCAN2009168 AK127147.1 −0.807 0.010 −0.60 1.51
UBXD7 c UBX domain containing 7 AB018337.1 −0.811 0.007 −0.58 1.50
C16orf48 b hypothetical protein DKFZp434A1319 (DKFZP434A1319) NM_032140.1 −0.714 0.015 −0.58 1.50
ZFHX4 zinc finger homeodomain 4 NM_024721.2 −0.643 0.030 −0.58 1.49
yo60a08r1 yo60a08r1 Soares breast 3NbHBst cDNA clone IMAGE:182294 5′ similar to contains Alu repetitive element; contains LTR9 repetitive element H41942.1 −0.692 0.031 −0.58 1.49
ZNF44 zinc finger protein 44 BC032246.1 −0.614 0.032 −0.57 1.49
SETD5 SET domain containing 5 AB051544.1 −0.6 0.031 −0.57 1.48
RNF103 ring finger protein 103 NM_005667.2 −0.648 0.031 −0.57 1.48
TP53INP1 tumor protein p53 inducible nuclear protein 1 NM_033285.2 −0.642 0.028 −0.55 1.47
yr35b01r1 yr35b01r1 Soares fetal liver spleen 1NFLS H59642.1 −0.631 0.038 −0.55 1.46
Soares fetal liver spleen 1NFLS b cDNA clone IMAGE:207241 5′      
BBS1 Bardet-Biedl syndrome 1 NM_024649.4 −0.616 0.047 −0.54 1.46
FLJ43900 cDNA FLJ43900 fis, clone TESTI4009973 AK125888.1 −0.669 0.043 −0.54 1.45
ITM2B b integral membrane protein 2B NM_021999.2 −0.681 0.028 −0.54 1.45
PDE6G b phosphodiesterase 6G, cGMP-specific, rod, gamma NM_002602.1 −0.87 0.003 −0.53 1.44
FKBP4 FK506 binding protein 4, 59kDa NM_002014.2 −0.697 0.023 −0.53 1.44
CHKB choline kinase β (CHKB) NM_005198.3 −0.593 0.039 −0.52 1.43
FLJ11946 b cDNA FLJ11946 fis, clone HEMBB1000709 AK022008.1 −0.922 0.005 −0.50 1.42
wi65f08× 1 NCI_CGAP_Kid12 wi65f08×1 NCI_CGAP_Kid12 cDNA clone IMAGE:2398215 3′ AI763182.1 −0.621 0.044 −0.50 1.42
NSMAF c neutral sphingomyelinase (N-SMase) activation associated factor NM_003580.2 -0.789 0.015 −0.50 1.41
SIX5 b sine oculis homeobox homolog 5 (Drosophila) NM_175875.3 −0.75 0.017 −0.49 1.40
64B2 Human retina cDNA Tsp509I-cleaved sublibrary b 64B2 Human retina cDNA Tsp509I-cleaved sublibrary Homo sapiens cDNA not directional W22248.1 −0.684 0.022 −0.48 1.39
XPC xeroderma pigmentosum, complementation group C NM_004628.2 −0.644 0.041 −0.48 1.39
603040523F1 NIH_MGC_115 603040523F1 NIH_MGC_115 cDNA clone IMAGE:5181509 5′ BI824163.1 −0.708 0.030 −0.48 1.39
DKFZp686 K2137 mRNA; cDNA DKFZp686K2137 (from clone DKFZp686K2137) AL833529.1 −0.626 0.037 −0.47 1.38
SRRM2 serine/arginine repetitive matrix 2 NM_016333.2 −0.632 0.042 −0.45 1.36
SH3GLB2 SH3-domain GRB2-like endophilin B2 NM_020145.2 −0.662 0.037 −0.45 1.36
yd89d12r1 Soares fetal liver spleen 1NFLS yd89d12r1 Soares fetal liver spleen 1NFLS cDNA clone IMAGE:115415 5′ T87528.1 −0.592 0.050 −0.43 1.35
cDNAclone IMAGE: 3636922 cDNA clone IMAGE:3636922 BC062348.1 −0.598 0.035 −0.43 1.34
PTPRA protein tyrosine phosphatase, receptor type, A NM_002836.2 −0.624 0.042 −0.41 1.33
C20orf111 chromosome 20 open reading frame 111 NM_016470.6 −0.632 0.043 −0.41 1.33
MGAT1 b mannosyl (α-1,3-)-glycoprotein β-1,2-N-acetylglucosaminyltransferase NM_002406.2 −0.799 0.019 −0.40 1.32
ZDHHC3 b zinc finger, DHHC domain containing 3 NM_016598.1 −0.634 0.040 −0.32 1.25
cDNA DKFZp 313K127 b mRNA; cDNA DKFZp313K127 (from clone DKFZp313K127) AL833316.1 −0.74 0.024 −0.31 1.24
GANAB glucosidase, alpha; neutral AB NM_198334.1 −0.676 0.034 −0.31 x-fold up-regulated in Apert 1.24
NUBP2 nucleotide binding protein 2 (MinD homolog, E coli) NM_012225.1 0.66 0.030 0.23 1.17
AGENCOURT_8454944 NIH_MGC_113 AGENCOURT_8454944 NIH_MGC_113 cDNA clone IMAGE:6278846 5′ BU899205.1 0.587 0.046 0.28 1.22
ATP5G1 ATP synthase, H + transporting, mitochondrial F0 complex, subunit C1 (subunit 9) NM_005175.1 0.618 0.042 0.28 1.22
AGENCOURT_8073800 NIH_MGC_110 b AGENCOURT_8073800 NIH_MGC_110 cDNA clone IMAGE:6083397 5′ BU147450.1 0.678 0.020 0.32 1.25
CIB1 b calcium and integrin binding 1 (calmyrin) NM_006384.2 0.665 0.035 0.32 1.25
ARL3 ADP-ribosylation factor-like 3 NM_004311.2 0.633 0.033 0.34 1.27
PSMA2 proteasome (prosome, macropain) subunit, α type, 2 NM_002787.3 0.648 0.039 0.36 1.28
MAGED2 b melanoma antigen, family D, 2 NM_014599.4 0.599 0.030 0.36 1.28
CUTA cutA divalent cation tolerance homolog (E. coli) NM_015921.1 0.603 0.044 0.37 1.29
CSNK1D casein kinase 1, delta NM_001893.3 0.614 0.042 0.37 1.29
MTCH2 mitochondrial carrier homolog 2 (C elegans) (MTCH2), nuclear gene encoding mitochondrial protein NM_014342.2 0.576 0.045 0.38 1.30
yp83b01s1 Soares fetal liver spleen 1NFLS yp83b01s1 Soares fetal liver spleen 1NFLS cDNA clone IMAGE:193993 3′ H51256.1 0.597 0.049 0.38 1.30
MAPRE1 microtubule-associated protein, RP/EB family, member 1 NM_012325.1 0.613 0.045 0.38 1.30
SMARCA4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 NM_003072.2 0.658 0.034 0.39 1.31
PLA2G12A phospholipase A2, group XIIA NM_030821.3 0.668 0.044 0.39 1.31
METTL2B b methyltransferase like 2 NM_018396.1 0.753 0.019 0.40 1.32
EEF1B2 c eukaryotic translation elongation factor 1 β 2 NM_001959.2 0.879 0.011 0.40 1.32
GABPB2 GA binding protein transcription factor, β subunit 2 NM_002041.2 0.664 0.027 0.40 1.32
ZNF414 b zinc finger protein 414 NM_032370.1 0.742 0.029 0.41 1.32
ADCY2 b adenylate cyclase 2 (brain) NM_020546.1 0.665 0.028 0.41 1.33
CASP8AP2 CASP8 associated protein 2 NM_012115.2 0.621 0.049 0.41 1.33
TIMP3 c TIMP metallopeptidase inhibitor 3 BG104808.1 0.966 0.006 0.42 1.34
EIF4A1 eukaryotic translation initiation factor 4A NM_001416.1 0.585 0.038 0.44 1.35
MUS81 b MUS81 endonuclease homolog (S. cerevisiae) NM_025128.3 0.662 0.024 0.44 1.35
CCDC72 coiled-coil domain containing 72 NM_015933.1 0.694 0.030 0.44 1.36
SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 16kDa NM_006938.2 0.619 0.044 0.44 1.36
DTYMK deoxythymidylate kinase NM_012145.2 0.64 0.037 0.44 1.36
STX2 b syntaxin 2 NM_194356.1 0.745 0.019 0.44 1.36
AARSD1 b alanyl-tRNA synthetase domain containing 1 NM_025267.2 0.786 0.019 0.45 1.37
CREB3 b cAMP responsive element binding protein 3 NM_006368.4 0.743 0.023 0.46 1.38
COX4NB neighbor of COX4 (NOC4) NM_006067.3 0.593 0.030 0.47 1.38
PDZK6 PDZ domain containing 6 NM_015693.2 0.63 0.038 0.47 1.39
UBE2N ubiquitin-conjugating enzyme E2N (UBC13 homolog, yeast) NM_003348.3 0.584 0.037 0.48 1.39
PPIH peptidyl prolyl isomerase H NM_006347.3 0.676 0.025 0.48 1.40
SIKE suppressor of IKK epsilon NM_025073.1 0.584 0.048 0.50 1.41
TK1 thymidine kinase 1, soluble NM_003258.1 0.685 0.028 0.50 1.41
PAFAH1B3 platelet-activating factor acetylhydrolase, isoform Ib, γ subunit 29kDa NM_002573.2 0.651 0.037 0.51 1.42
SFRS7 b splicing factor, arginine/serine-rich 7, 35kDa NM_006276.36 0.705 0.028 0.52 1.44
PSMC5 proteasome (prosome, macropain) 26S subunit, ATPase, 5 NM_002805.4 0.624 0.043 0.53 1.44
yr11c06r1 Soares fetal liver spleen 1NFLS b yr11c06r1 Soares fetal liver spleen 1NFLS cDNA clone IMAGE:204970 5′ H57392.1 0.742 0.015 0.53 1.44
C15orf29 b chromosome 15 open reading frame 29 NM_024713.1 0.793 0.011 0.53 1.44
GFOD2 c glucose-fructose oxidoreductase domain containing 2 NM_030819.2 0.745 0.019 0.53 1.45
HN1 hematological and neurological expressed 1 NM_001002032.1 0.683 0.045 0.54 1.46
DKFZp451H129 mRNA; cDNA DKFZp451H129 (from clone DKFZp451H129) AL833295.1 0.649 0.035 0.54 1.46
CKLF b chemokine-like factor NM_016951.2 0.726 0.021 0.55 1.46
OBFC1 oligonucleotide/oligosaccharide-binding fold containing 1 NM_024928.3 0.688 0.027 0.55 1.46
VAMP4 b vesicle-associated membrane protein 4, transcript variant 1 NM_201994.1 0.744 0.010 0.55 1.46
RRM1 ribonucleotide reductase M1 polypeptide NM_001033.2 0.612 0.045 0.55 1.46
PSME4 b proteasome (prosome, macropain) activator subunit 4 NM_014614.1 0.736 0.022 0.56 1.47
PLK3 polo-like kinase 3 (Drosophila) NM_004073.2 0.642 0.036 0.57 1.48
MRPL35 b mitochondrial ribosomal protein L35 NM_016622.2 0.706 0.014 0.57 1.49
DLAT b dihydrolipoamide S-acetyltransferase (E2 component of pyruvate dehydrogenase complex) NM_001931.2 0.707 0.019 0.58 1.49
HIP2 b huntingtin interacting protein 2 NM_005339.3 0.723 0.017 0.58 1.49
C20orf7 chromosome 20 open reading frame 7 NM_199052.1 0.615 0.041 0.59 1.50
UFD1L b ubiquitin fusion degradation 1 like (yeast) NM_005659.3 0.616 0.023 0.59 1.51
POP5 processing of precursor 5, ribonuclease P/MRP subunit (S cerevisiae) (POP5) NM_015918.3 0.623 0.041 0.59 1.51
SLC35B3 solute carrier family 35, member B3 NM_015948.2 0.628 0.037 0.60 1.51
CDKN3 cyclin-dependent kinase inhibitor 3 (CDK2-associated dual specificity phosphatase) NM_005192.2 0.613 0.044 0.60 1.52
LZIC b leucine zipper and CTNNBIP1 domain containing NM_032368.3 0.766 0.019 0.60 1.52
LETM1 leucine zipper-EF-hand containing transmembrane protein 1 NM_012318.1 0.589 0.049 0.60 1.52
RNASEH2A b ribonuclease H2, subunit A NM_006397.2 0.869 0.011 0.60 1.52
NEDD1 neural precursor cell expressed, developmentally downregulated 1 NM_152905.2 0.643 0.041 0.62 1.53
CEP78 centrosomal protein 78kDa AW962072.1 0.672 0.028 0.63 1.54
UI-H-BI0-aah-e-06-0-UIs1 NCI_CGAP_Sub1 UI-H-BI0-aah-e-06-0-UIs1 NCI_CGAP_Sub1 cDNA clone IMAGE:2709227 3′ AW014009.1 0.597 0.037 0.63 1.55
CKAP2 cytoskeleton associated protein 2 NM_018204.2 0.644 0.037 0.66 1.58
ACTR3B b ARP3 actin-related protein 3 homolog B (yeast) NM_020445.1 0.765 0.016 0.67 1.59
ELAVL1 ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu antigen R) NM_001419.2 0.635 0.041 0.67 1.59
POLR3K b polymerase (RNA) III (DNA directed) polypeptide K NM_016310.2 0.802 0.013 0.69 1.61
PI4KII b phosphatidylinositol 4-kinase type II NM_018425.2 0.77 0.014 0.69 1.62
TMEM107 b transmembrane protein 107 NM_183065.1 0.739 0.022 0.70 1.62
BCAP29 B-cell receptor-associated protein 29 NM_018844.1 0.644 0.040 0.70 1.63
PRPS1L1 b phosphoribosyl pyrophosphate synthetase 1-like 1 NM_175886.2 0.728 0.022 0.71 1.63
MTFMT b mitochondrial methionyl-tRNA formyltransferase NM_139242.2 0.866 0.008 0.72 1.64
DDX49 DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 NM_019070.3 0.61 0.046 0.73 1.66
RAD1 b RAD1 homolog (S. pombe) NM_002853.2 0.71 0.018 0.73 1.66
CMTM5 CKLF-like MARVEL transmembrane domain containing 5 NM_138460.2 0.721 0.019 0.74 1.67
NEK6 b NIMA (never in mitosis gene a)-related kinase 6 NM_014397.3 0.715 0.017 0.74 1.67
K-EST0149992 L3SNU475 b K-EST0149992 L3SNU475 cDNA clone L3SNU475-29-H12 5′ CB108944.1 0.657 0.015 0.75 1.68
yx15f01s1 Soares melanocyte 2NbHM b yx15f01s1 Soares melanocyte 2NbHM cDNA clone IMAGE:261817 3′ H99198.1 0.766 0.015 0.76 1.70
EXOSC9 b exosome component 9 NM_005033.1 0.721 0.021 0.76 1.70
UI-E-CI0-aah-e-03-0-UIr1 UI-E-CI0 UI-E-CI0-aah-e-03-0-UIr1 UI-E-CI0 cDNA clone UI-E-CI0-aah-e-03-0-UI 5′ BM690376.1 0.659 0.031 0.79 1.73
PTS 6-pyruvoyltetrahydropterin synthase NM_000317.1 0.597 0.047 0.79 1.73
C14orf143 chromosome 14 open reading frame 143 NM_145231.1 0.629 0.047 0.79 1.73
UBE2T HSPC150 protein similar to ubiquitin-conjugating enzyme NM_014176.1 0.664 0.029 0.83 1.77
SAE1 SUMO-1 activating enzyme subunit 1 NM_005500.1 0.62 0.049 0.83 1.78
AURKB aurora kinase B NM_004217.1 0.692 0.031 0.84 1.79
ARSJ arylsulfatase family, member J AK027201.1 0.708 0.028 0.85 1.80
RRM2 b ribonucleotide reductase M2 polypeptide NM_001034.1 0.781 0.019 0.86 1.81
BCL7A B-cell CLL/lymphoma 7A NM_020993.2 0.652 0.034 0.86 1.82
IVNS1ABP influenza virus NS1A binding protein NM_006469.2 0.66 0.035 0.87 1.82
NCAPG non-SMC condensin I complex, subunit G NM_022346.2 0.689 0.028 0.87 1.83
CENPM c centromere protein M NM_024053.2 0.693 0.006 0.87 1.83
C5orf13 chromosome 5 open reading frame 13 NM_004772.1 0.626 0.042 0.89 1.85
MCM4 MCM4 minichromosome maintenance deficient 4 (S. cerevisiae) NM_182746.1 0.65 0.030 0.90 1.87
FLJ43294 cDNA FLJ43294 fis, clone MESTC1000042 AK125284.1 0.527 0.049 0.93 1.90
PTPDC1 b protein tyrosine phosphatase domain containing 1 NM_152422.3 0.725 0.027 0.95 1.93
LOC90624 hypothetical protein LOC90624 NM_181705.1 0.642 0.026 0.95 1.94
SPAG5 b sperm associated antigen 5 NM_006461.2 0.876 0.007 0.98 1.97
CTPS CTP synthase NM_001905.1 0.496 0.046 0.98 1.98
zu70f09r1 Soares_testis_NHT zu70f09r1 Soares_testis_NHT cDNA clone IMAGE:743369 5′ AA400694.1 0.578 0.039 0.99 1.98
MND1 meiotic nuclear divisions 1 homolog (S. cerevisiae) NM_032117.2 0.674 0.034 1.00 2.00
KIAA0101 KIAA0101 gene product NM_014736.3 0.58 0.050 1.02 2.03
ZNF738 c zinc finger protein 738 BC034499.1 1.07 0.003 1.03 2.04
EHD4 c EH-domain containing 4 NM_139265.2 0.725 0.001 1.04 2.06
MNS1 b meiosis-specific nuclear structural 1 NM_018365.1 0.832 0.013 1.06 2.08
ARHGAP11A similar to human GTPase-activating protein NM_014783.2 0.7 0.027 1.08 2.12
CENPN c centromere protein N NM_018455.3 1.142 0.001 1.10 2.14
STMN1 b stathmin 1/oncoprotein 18 NM_203401.1 0.969 0.006 1.11 2.16
DUSP2 b dual specificity phosphatase 2 NM_004418.2 0.953 0.004 1.17 2.25
SPBC25 b spindle pole body component 25 homolog (S. cerevisiae) NM_020675.3 0.892 0.010 1.18 2.27
HIST1H4C histone 1, H4c NM_003542.3 0.682 0.033 1.22 2.32
TCF19 transcription factor 19 (SC1) BC033086.1 0.631 0.041 1.23 2.34
CIP29 cytokine induced protein 29 kDa NM_033082.1 0.65 0.040 1.24 2.36
FLJ39342 b cDNA FLJ39342 fis, clone OCBBF2018873 AK096661.1 0.776 0.017 1.32 2.50
FLJ23131 cDNA: FLJ23131 fis, clone LNG08502 AK026784.1 0.645 0.039 1.61 3.05
zv03f03r1 Soares_NhHMPu_S1 zv03f03r1 Soares_NhHMPu_S1 cDNA clone IMAGE:752573 5′ AA419568.1 0.718 0.041 1.74 3.34
CNN1 calponin 1, basic, smooth muscle NM_001299.3 0.808 0.022 2.09 4.24
HAPLN1 c hyaluronan and proteoglycan link protein 1 NM_001884.2 1.003 0.005 3.00 7.99
  1. aSNR stands for “signal to noise ratio”.
  2. bThe 120 genes identified as differentially expressed in at least 50% of the “leave-one-out” datasets.
  3. cThe 25 genes identified as differentially expressed in 100% of the “leave-one-out” datasets.