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Table 1 Primers and condition—PCR analysis of flanking regions of the STS gene

From: Deletion Pattern of the STS Gene in X-linked Ichthyosis in a Mexican Population

Locus

Primer Sequence

Annealing (°C)

(bp)

DXS89

F CGT TCT CAA CAA TAG ATC ACG

R ACT TAC ATT GGC AAT GCA TCC

50

166

DXS996

F AAA TTC TTG CCT AGG CCA CTC TAG G

R ACG TTG TTC TGG ATC GTA TGC TAG G

62

153–171

DXS1139

F GCT TGG ATC AGG GCT GGA ATT AG

R TTA AAC AAG GGC CAT TCT GCA AG

60

500

DXS1130

F TGT CTC AAC CGT CAA GTC AC

R CTT GTC TTT GAA GAT GCT CCC

60

367

5′ GEN STS

F GGC CTA GAA GAA GGT TGA AGG TCC C

R AAG AGG TTG GAT GAG ATG GGC ATA C

60

292

3′ GEN STS

F GAA ATC CTC AAA GTC ATG CAG GAA G

R CCT CCA GTT GAG TAG CTG TTG AGC T

60

363

DXS1131 +

F CCA AAC TGC CAC TGG TTG AG

R CCG TGA TCT CTG ATG AAC CG

58

170

DXS1133

F TGG TAG AAT ACA CTG CAG GTG TGC

R CAG CTT GTT AAG TGC TGT CTA TCC

60

260

DXS237

F CAT GTG AGG AAT ACA GGA GCG AA

R GCC AAC TCA GCT AAT GAC TGT AG

55

400

DXS1132

F TGC TAC AAG CAT TTC AGA GG

R CAA GCT CTG ACA TGT GAC TTC

55

152

DXF22S1

F ATC CAC TCC CCA TCT TAC CTT TCC C

R CAA ATA GAC CCC TTC TTG TCT GGG

62

262

DXS278

F CCT TGA GTC TTT GTT CTG GAA CCC

R CTA CGT GGT TGA ATG CCT GGA CTC

55

210

DXS1134

F TGA GTA TGT GCT TTG AGC TAG GGT C

R CTG CGA ACA ATT CTT TTA GTT CCT C

50

400

  1. + 1% de DMSO (final concentration)
  2. Conditions are: DNA 500 ng, primers 0.4 µM, dNTP’s 0.08 mM, MgCl2 1.5 mM, buffer 1x, Taq Pol 1.5 U, vol 50 µL. Initial denaturalized 2 min at 94°C; 30 cycles of: 1 min at 94°C; 1 min of annealing; 1 min at 72°C and finally 5 min at 72°C.