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Table 4 RT-PCR analysis of microdissected HRS cells for expression of rhoC, ATBF1, and p21 SNFT

From: Profiling of Hodgkin’s Lymphoma Cell Line L1236 and Germinal Center B Cells: Identification of Hodgkin’s Lymphoma-specific Genes

Samplesa

Samples positive/samples analyzed

rhoC

ATBF1

p21SNFT

HRS cells

   

Case 1

3/3

3/3

3/3

Case 2

3/3

3/3

2/3

Case 3

3/3

3/3

3/3

Case 4

3/3

3/3

2/3

Controls (cases 1 to 4)

   

KMH2 cells

6/6

5/5

5/6

Non-HRS cellsb

3/19

1/12

0/12

GC B cells

0/6

0/6

0/6

Buffer controls

0/14

0/12

1/12

  1. aGroups of 50 HRS cells and 50 non-HRS cells (small cells isolated from the same tissue sections as the HRS cells) were analyzed. Pools of 50 GC B cells isolated from sections of 2 tonsils were analyzed as additional controls. Intact RNA in the tonsillar samples was confirmed by successful amplification of a fragment of the CD52 RNA from several GC B-cell samples (not shown). Buffer controls represent reaction tubes with buffer but without cells. Groups of 10 FACS-sorted KMH2 cells served as positive controls for cDNA synthesis and RT-PCR.
  2. bThe few positive non-HRS cell samples may be due to cellular contamination of the samples by fragments from HRS cells or expression of the respective genes by some cells among the non-HRS cells.