Affymetrix microarray | qRT-PCR | ||||||||
---|---|---|---|---|---|---|---|---|---|
Probe set ID | Gene symbol | Gene name | Mean fold-change, T versus, C | Mean fold-change, R versus C | P(T versus C) | Reference gene | Mean fold-change, T versus C | Mean fold-change, R versus C | P (T versus C) |
Downregulated (>2.0-fold) | |||||||||
227337_at | * ANKRD37 | Ankyrin repeat domain 37 | −4.8 | 1.2 | 0.018 | HMBS | −3.4 | 1.4 | 0.018 |
KRT19 | −3.4 | 1.3 | 0.018 | ||||||
222088_s_at | * SLC2A3 | Solute carrier family 2 (facilitated glucose transporter), member 3 | −3.7 | 1.3 | 0.018 | HMBS | −2.8 | 1.2 | 0.043 |
KRT19 | −2.8 | 1.2 | 0.043 | ||||||
202887_s_at | * DDIT4 | DNA-damage-inducible transcript 4 | −3.6 | 1.0 | 0.018 | HMBS | −2.8 | 1.3 | 0.018 |
KRT19 | −2.7 | 1.2 | 0.018 | ||||||
201169_s_at | * BHLHB2 | Basic helix-loop-helix domain containing, class B, 2 | −3.3 | 1.2 | 0.018 | HMBS | −2.3 | 1.1 | 0.018 |
201170_s_at | −2.5 | 1.0 | 0.018 | KRT19 | −2.2 | 1.2 | 0.018 | ||
201313_at | * ENO2 | Enolase 2 (gamma, neuronal) | −3.1 | 1.0 | 0.018 | HMBS | −2.8 | 1.3 | 0.018 |
KRT19 | −2.7 | 1.2 | 0.018 | ||||||
207543_s_at | * P4HA1 | Procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), a polypeptide 1 | −2.9 | 1.0 | 0.018 | HMBS | −2.4 | 1.2 | 0.018 |
KRT19 | −2.3 | 1.2 | 0.018 | ||||||
202620_s_at | * PLOD2 | Procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 | −2.8 | 1.1 | 0.018 | HMBS | −2.2 | 1.1 | 0.018 |
KRT19 | −2.1 | 1.2 | 0.018 | ||||||
202022_at | * ALDOC | Aldolase C, fructose-bisphosphate | −2.8 | 1.1 | 0.018 | HMBS | −3.3 | 1.1 | 0.018 |
KRT19 | −3.1 | 1.1 | 0.018 | ||||||
240991_at | * NDRG1 | N-myc downstream regulated gene 1 | −2.7 | 1.1 | 0.018 | HMBS | −4.6 | 1.3 | 0.018 |
200632_s_at | −2.5 | 1.1 | 0.018 | KRT19 | −4.4 | 1.3 | 0.018 | ||
211527_x_at | * VEGFA | Vascular endothelial growth factor A | −2.4 | 1.3 | 0.018 | HMBS | −2.0 | 1.1 | 0.018 |
212171_x_at | −2.0 | 1.1 | 0.018 | KRT19 | −1.9 | 1.1 | 0.018 | ||
221479_s_at | * BNIP3L | BCL2/adenovirus E1B 19kDa interacting protein 3-like | −2.4 | 1.1 | 0.018 | HMBS | −1.9 | 1.4 | 0.018 |
221478_at | −2.3 | 1.1 | 0.018 | KRT19 | −1.9 | 1.4 | 0.018 | ||
201250_s_at | * SLC2A1 | Solute carrier family 2 (facilitated glucose transporter), member 1 | −2.4 | 1.1 | 0.018 | HMBS | −2.2 | 1.2 | 0.018 |
201249_at | −2.0 | 1.1 | 0.018 | KRT19 | −2.1 | 1.2 | 0.018 | ||
202973_x_at | FAM13A1 | Family with sequence similarity 13, member A1 | −2.4 | 1.7 | 0.018 | HMBS | — | NA | NA |
217047_s_at | −2.2 | 1.6 | 0.018 | KRT19 | |||||
226390_at | STARD4 | StAR-related lipid transfer (START) domain containing 48 | −2.4 | 1.0 | 0.018 | HMBS | −2.4 | 1.2 | 0.018 |
KRT19 | −2.3 | 1.2 | 0.027 | ||||||
202219_at | * SLC6A8 | Solute carrier family 6 (neurotransmitter transporter, creatinine), member 8 | −2.3 | 1.1 | 0.018 | HMBS | −2.7 | 1.1 | 0.028 |
KRT19 | −2.7 | 1.2 | 0.028 | ||||||
202464_s_at | * PFKFB3 | 6-Phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 | −2.3 | 1.0 | 0.018 | HMBS | −2.2 | 1.1 | 0.018 |
KRT19 | −2.0 | 1.2 | 0.018 | ||||||
202912_at | * ADM | Adrenomedullin | −2.3 | 1.3 | 0.018 | HMBS | −2.2 | 1.6 | 0.018 |
KRT19 | −2.2 | 1.6 | 0.027 | ||||||
218498_s_at | * ERO1L | ERO1-like (S. cerevisiae) | −2.3 | 1.1 | 0.018 | HMBS | −2.2 | 1.4 | 0.018 |
222646_s_at | −2.1 | 1.1 | 0.018 | KRT19 | −2.0 | 1.3 | 0.018 | ||
213562_s_at | SQLE | Squalene epoxidase | −2.3 | 1.1 | 0.018 | HMBS | −1.6 | 1.4 | 0.043 |
KRT19 | −1.5 | 1.3 | 0.043 | ||||||
230710_at | — | cDNA FLJ41489 fis, clone BRTHA2004582 | −2.3 | 1.2 | 0.018 | HMBS | — | NA | NA |
KRT19 | |||||||||
216607_s_at | CYP51A1 | Cytochrome P450, family 51, subfamily A, polypeptide 1 | −2.2 | 1.0 | 0.018 | HMBS | −2.2 | 1.3 | 0.018 |
KRT19 | −2.1 | 1.3 | 0.018 | ||||||
238551_at | FUT11 | −2.2 | 1.0 | 0.018 | HMBS | −1.8 | 1.1 | 0.018 | |
KRT19 | −1.7 | 1.0 | 0.026 | ||||||
216915_s_at | PTPN12 | Protein tyrosine phosphatase, non-receptor type 12 | −2.2 | 1.3 | 0.018 | HMBS | 1.0 | 1.1 | 0.612 |
KRT19 | 1.0 | 1.2 | 0.398 | ||||||
213349_at | TMCC1 | Transmembrane and coiled-coil domain family 1 | −2.2 | 1.1 | 0.018 | HMBS | — | NA | NA |
KRT19 | |||||||||
243543_at | SC4MOL | Sterol-C4-methyl oxidase-like | −2.1 | 1.0 | 0.018 | HMBS | −2.1 | 1.1 | 0.018 |
KRT19 | −2.0 | 1.1 | 0.018 | ||||||
201037_at | * PFKP | Phosphofructokinase, platelet | −2.0 | 1.1 | 0.018 | HMBS | −1.9 | 1.2 | 0.028 |
KRT19 | −1.9 | 1.2 | 0.028 | ||||||
200738_s_at | * PGK1 | Phosphoglycerate kinase 1 | −2.0 | 1.0 | 0.018 | HMBS | −1.7 | 1.1 | 0.018 |
KRT19 | −1.5 | 1.1 | 0.043 | ||||||
Upregulated (>2-fold) | |||||||||
1552411_at | DEFB106A/B | Defensin, β 106A/defensin, β 106B | 2.8 | −1.3 | 0.018 | HMBS | — | NA | NA |
KRT19 | |||||||||
216500_at | — | — | 2.3 | 1.1 | 0.018 | HMBS | — | NA | NA |
KRT19 | |||||||||
218543_s_at | PARP12 | Poly (ADP-ribose) polymerase family, member 12 | 2.2 | 1.1 | 0.018 | HMBS | 2.0 | 1.2 | 0.028 |
KRT19 | 2.1 | 1.2 | 0.028 | ||||||
Downregulated (<2.0-fold) | |||||||||
224657_at | * ERRFI1 | ERBB receptor feedback inhibitor 1 | −1.8 | 1.2 | 0.018 | HMBS | −1.4 | 1.4 | 0.091 |
KRT19 | −1.2 | 1.5 | 0.150 | ||||||
218507_at | * HIG2 | Hypoxia-inducible protein 2 | −1.8 | 1.1 | 0.018 | HMBS | −1.3 | 1.6 | 0.043 |
1554452_a_at | −1.8 | 1.2 | 0.018 | KRT19 | −1.2 | 1.4 | 0.236 | ||
1569020_at | * NEDD9 | Neural precursor cell expressed, developmentally downregulated 9 | −1.8 | 1.1 | 0.018 | HMBS | −1.6 | 1.3 | 0.063 |
KRT19 | −1.5 | 1.4 | 0.034 | ||||||
225366_at | PGM2 | Phosphoglucomutase 2 | −1.5 | 1.1 | 0.018 | HMBS | 1.0 | 1.1 | 0.600 |
KRT19 | 1.0 | 1.1 | 0.340 | ||||||
Upregulated (<2.0-fold) | |||||||||
231974_at | MLL2 | Myeloid/lymphoid or mixed-lineage leukemia 2 | 1.7 | −1.1 | 0.018 | HMBS | 1.3 | 1.0 | 0.499 |
KRT19 | 1.4 | 1.1 | 0.596 | ||||||
No change | |||||||||
200989_at | HIF1A | Hypoxia-inducible factor 1, a subunit (basic helix-loop-helix transcription factor) | −1.1 | −1.1 | 0.176 | HMBS | 1.0 | 1.2 | 1.000 |
KRT19 | 1.2 | 1.2 | 0.446 |