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Table 4 Clinical classification of mutated alleles.

From: A Genotypic-Oriented View of CFTR Genetics Highlights Specific Mutational Patterns Underlying Clinical Macrocategories of Cystic Fibrosis

Allele legacy name

Allele HGVS name

Clinical classification

CFTR2

M1V

c.1A>G

CF-PI

CF-causing

 

p.Met1Val

  

P5L

c.14C>T

CF-PS, CFTR-RD

nd

 

p.Pro5Leu

  

ex2,3del

c.54-5940_273+10250del21080

CF-PI

CF-causing

ex2del

c.54-1161_164+1603del2875

CF-PI

nd

W19X(TAG)

c.56G>A

CF-PI

nd

 

p.Trp19*

  

[L24F;296+2T>G]

c.[72G>C;164+2T>G]

uncertain: CF-PI and/or CF-PS

L24F nd; 296+2T>G nd

R31C

c.91C>T

CFTR-RD

non CF-causing

 

p.Arg31Cys

  

S42F

c.125C>T

uncertain: found only with an unknown allele in trans

nd

 

p.Ser42Phe

  

E56G

c.167G>A

CBAVD

nd

 

p.Glu56Lys

  

[R74W;V201M;D1270N]

c.[220C>T;601G>A;3808G>A]

uncertain: CF-PS and/or CFTR-RD and/or CBAVD

R74W varying clinical consequence; V201M nd;

 

p.[Arg74Trp;Val201Met;Asp1270Asn]

 

D1270N varying clinical consequence

[359insT;(TG)12T5]

c.[227_228insT;1210-14TG[12];1210-12T[5]]

uncertain: CF-PI and/or CF-PS and/or CFTR-RD

359insT nd; T5 varying clinical consequence

G85E

c.254G>A

CF-PI, CF-PS

CF-causing

 

p.Gly85Glu

  

D110H

c.328G>C

CF-PS

CF-causing

 

p.Asp110His

  

R117C

c.349C>T

CF-PS

CF-causing

 

p.Arg117Cys

  

R117H

c.350G>A

CFTR-RD

varying clinical consequence

 

p.Arg117His

  

[R117L;L997F]

c.[350G>T;2991G>C]

CF-PI, CF-PS

R117L nd; L997F non CF-causing

 

p.[Arg117Leu;Leu997Phe]

  

G126D

c.377G>A

uncertain: CF-PI and/or CF-PS

nd

 

p.Gly126Asp

  

H139R

c.416A>G

CF-PI, CF-PS

nd

 

p.His139Arg

  

574delA

c.442delA

CF-PI

CF-causing

 

p.Ile148LeufsX5

  

621+1G>T

c.489+1G>T

CF-PI

CF-causing

621+3A>G

c.489+3A>G

CFTR-RD

nd

G178R

c.532G>A

CF-PI

CF-causing

 

p.Gly178Arg

  

D192G

c.575A>G

CF-PS

nd

 

p.Asp192Gly

  

E193K

c.577G>A

CBAVD

nd

 

p.Glu193Lys

  

711+1G>T

c.579+1G>T

CF-PI

CF-causing

711+3A>G

c.579+3A>G

CF-PS

CF-causing

711+5G>A

c.579+5G>A

uncertain: CF-PI and/or CF-PS and/or CFTR-RD

CF-causing

  

and/or CBAVD

 

H199R

c.596A>G

CF-PI

nd

 

p.His199Arg

  

L206W

c.617T>G

CFTR-RD

CF-causing

 

p.Leu206Trp

  

Q220X

c.658C>T

CF-PI

CF-causing

 

p.Gln220*

  

852del22

c.720_741delAGGGAGAATGATGATGAAGTAC

CF-PI

CF-causing

 

p.Gly241GlufsX13

  

907delCins29

c.775delCinsTCTTCCTCAGATTCATTGTGATTACCTCA

uncertain: CF-PI and/or CF-PS

nd

C276X

c.828C>A

CF-PI

CF-causing

 

p.Cys276*

  

991del5

c.859_863delAACTT p.Asn287LysfsX19

CF-PI

nd

L320V

c.958T>G p.Leu320Val

uncertain: CF-PI and/or CF-PS and/or CFTR-RD

nd

R334W

c.1000C>T p.Arg334Trp

CF-PI, CF-PS

CF-causing

R334L

c.1001G>T p.Arg334Leu

CF-PS

nd

T338I

c.1013C>T p.Thr338Ile

CF-PS, CFTR-RD, CBAVD

CF-causing

R347P

c.1040G>C p.Arg347Pro

CF-PI, CF-PS

CF-causing

R347H

c.1040G>A p.Arg347His

CF-PS

CF-causing

[M348K;S912X]

c.[1043T>A;2735C>A] p.[Met348Lys;Ser912*]

CF-PI

M348K nd; S912X CF-causing

[1249-8A>G;G576A;R668C]

c.[1117-8A>G;1727G>C;2002C>T]

uncertain: found only with an unknown allele in trans

1249-8A>G nd; G576A non CF-causing; R668C non CF-causing

1259insA

c.1127_1128insA p.Gln378AlafsX4

CF-PI

CF-causing

E379X

c.1135G>T p.Glu379*

CF-PI

nd

M394R

c.1181T>G p.Met394Arg

CF-PI

nd

(TG)11T5

c.[1210-14TG[11];1210-12T[5]]

CFTR-RD, CBAVD

T5 varying clinical consequence

(TG)12T5

c.[1210-14TG[12];1210-12T[5]]

CF-PS, CFTR-RD, CBAVD

T5 varying clinical consequence

(TG)13T5

c.[1210-14TG[13];1210-12T[5]]

CF-PS, CFTR-RD

T5 varying clinical consequence

[(TG)11T5;V562I;A1006E]

c.[1210-14TG[11];1210-12T[5];1684G>A;3017C>A]

CF-PS, CFTR-RD

T5 varying clinical consequence; V562I nd; A1006E nd

K442X

c.1324A>T p.Lys442*

CF-PI

nd

T465N

c.1394C>A p.Thr465Asn

CF-PI

nd

[S466X(TGA);R1070Q]

c.[1397C>G;3209G>A] p.[Ser466*;Arg1070Gln]

CF-PI

S466X(TGA) CF-causing; R1070Q varying clinical consequence

[E479X;V754M]

c.[1435G>T;2260G>A] p.[Glu479*;Val754Met]

CF-PI

E479X nd; V754M non CF-causing

F508del

c.1521_1523delCTT p.Phe508del

CF-PI

CF-causing

1717-8G>A

c.1585-8G>A

CF-PI

CF-causing

1717-1G>A

c.1585-1G>A

CF-PI

CF-causing

D529N

c.1585G>A p.Asp529Asn

CF-PI

nd

G542X

c.1624G>T p.Gly542*

CF-PI

CF-causing

S549R(A>C)

c.1645A>C p.Ser549Arg

CF-PI

CF-causing

S549N

c.1646G>A p.Ser549Asn

CF-PI

CF-causing

S549R(T>G)

c.1647T>G p.Ser549Arg

CF-PI

CF-causing

G551D

c.1652G>A p.Gly551Asp

CF-PI

CF-causing

Q552X

c.1654C>T p.Gln552*

CF-PI

CF-causing

R553X

c.1657C>T p.Arg553*

CF-PI

CF-causing

L558S

c.1673T>C p.Leu558Ser

CF-PI

unknown significance

Y569D

c.1705T>G p.Tyr569Asp

CFTR-RD, CBAVD

unknown significance

L571S

c.1712T>C p.Leu571Ser

CF-PI

nd

[G576A;R668C]

c.[1727G>C;2002C>T] p.[Gly576Ala;Arg668Cys]

CFTR-RD

G576A non CF-causing; R668C non-CF causing

D579G

c.1736A>G p.Asp579Gly

CF-PS

varying clinical consequence

E585X

c.1753G>T p.Glu585*

CF-PI

CF-causing

H609L

c.1826A>T p.His609Leu

CFTR-RD

nd

A613T

c.1837G>A p.Ala613Thr

CF-PS

nd

D614G

c.1841A>G p.Asp614Gly

CF-PS

unknown significance

2143delT

c.2012delT p.Leu671*

CF-PS

CF-causing

2183AA>G

c.2051_2052delAAinsG p.Lys684SerfsX38

CF-PI, CF-PS

CF-causing

2184insA

c.2052_2053insA p.Gln685ThrfsX4

CF-PI

CF-causing

R709X

c.2125C>T p.Arg709*

CF-PI

CF-causing

L732X

c.2195T>G p.Leu732*

CF-PI

CF-causing

R764X

c.2290C>T p.Arg764*

CF-PI

CF-causing

Q779X

c.2335C>T p.Gln779*

uncertain: CF-PI and/or CF-PS

nd

E831X

c.2491G>T p.Glu831*

CF-PS

CF-causing

Y849X

c.2547C>A p.Tyr849*

CF-PI

CF-causing

ex14b-17bdel

c.2620-674_3367+198del9858

CF-PI

nd

2789+5G>A

c.2657+5G>A

CF-PI, CF-PS

CF-causing

2790-2A>G

c.2658-2A>G

CF-PS

nd

S912L

c.2735C>T p.Ser912Leu

uncertain: found only with an unknown allele in trans

nd

S945L

c.2834C>T p.Ser945Leu

CF-PS

CF-causing

S977F

c.2930C>T p.Ser977Phe

CFTR-RD

varying clinical consequence

L997F

c.2991G>C p.Leu997Phe

CF-PS, CFTR-RD, CBAVD

non CF-causing

ex17a-18del

c.2988+1173_3468+2111del8600

CF-PI

nd

P1013L

c.3038C>T p.Pro1013Leu

CFTR-RD

nd

Y1032C

c.3095A>G p.Tyr1032Cys

CFTR-RD

nd

3272-26A>G

c.3140-26A>G

CF-PS

CF-causing

L1065P

c.3194T>C p.Leu1065Pro

CF-PI, CF-PS

CF-causing

L1065R

c.3194T>G p.Leu1065Arg

uncertain: CF-PI and/or CF-PS

nd

R1066C

c.3196C>T p.Arg1066Cys

CF-PI

CF-causing

R1066H

c.3197G>A p.Arg1066His

CF-PI

CF-causing

G1069R

c.3205G>A p.Gly1069Arg

uncertain: found only with an unknown allele in trans

varying clinical consequence

L1077P

c.3230T>C p.Leu1077Pro

CF-PI

CF-causing

Y1092X(C>A)

c.3276C>A p.Tyr1092*

CF-PI

CF-causing

M1137V

c.3409A>G p.Met1137Val

CFTR-RD

nd

D1152H

c.3454G>C p.Asp1152His

CF-PI, CF-PS, CFTR-RD

varying clinical consequence

R1162X

c.3484C>T p.Arg1162*

CF-PI

CF-causing

D1168G

c.3503A>G p.Asp1168Gly

CFTR-RD

nd

3667ins4

c.3535_3536insTCAA p.Thr1179IlefsX17

CF-PI

CF-causing

S1206X

c.3617C>A p.Ser1206*

uncertain: CF-PI and/or CF-PS

nd

I1234V

c.3700A>G p.Ile1234Val

CF-PI, CF-PS

CF-causing

S1235R

c.3705T>G p.Ser1235Arg

CFTR-RD

non CF-causing

3849+10kbC>T

c.3717+12191C>T

CF-PI, CF-PS

CF-causing

V1240G

c.3719T>G

CFTR-RD

nd

 

p.Val1240Gly

  

G1244R

c.3730G>A p.Gly1244Arg

uncertain: CF-PI and/or CF-PS

nd

G1244E

c.3731G>A p.Gly1244Glu

CF-PI, CF-PS

CF-causing

G1247R(G>C)

c.3739G>C p.Gly1247Arg

CF-PS

nd

W1282X

c.3846G>A p.Trp1282*

CF-PI

CF-causing

Q1291R

c.3872A>G p.Gln1291Arg

CF-PI, CF-PS, CFTR-RD

nd

4016insT

c.3884_3885insT p.Ser1297PhefsX5

CF-PI

CF-causing

4040delA

c.3908delA p.Asn1303ThrfsX25

CF-PI

nd

N1303K

c.3909C>G p.Asn1303Lys

CF-PI

CF-causing

ex22-24del

c.3964-3890_4443+3143del9454ins5

CF-PI

nd

ex22,23del

c.3964-78_4242+577del 1532

CF-PI

CF-causing

4168delCTAAGCC

c.4036_4042del p.Leu1346MetfsX6

CF-PI

nd

G1349D

c.4046G>A p.Gly1349Asp

CF-PI

CF-causing

H1375P

c.4124A>C p.His1375Pro

uncertain: CF-PI and/or CF-PS

nd

S1455X

c.4364C>G p.Ser1455*

CF-PS, CFTR-RD

nd

Q1476X

c.4426C>T p.Gln1476*

CFTR-RD

nd

  1. nd, Not determined. According to the three rules described (see Materials and Methods), each mutated allele was classified according to its clinical outcome. It was impossible to univocally assign 16 of the 125 different mutated alleles to one or more macrocategories. A comparison with the CFTR2 project (11) (https://doi.org/www.cftr2.org) is shown. The alleles are ordered according to their nucleotidic position.