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Table 3 Mutation frequency in genes encoding proteins involved in (A) pancreatic secretion and ion homeostasis, (B) autophagy and (C) autoimmune pancreatitis-related genes.

From: Extensive Molecular Analysis Suggested the Strong Genetic Heterogeneity of Idiopathic Chronic Pancreatitis

    

Pancreatitis

    

(162 alleles)

1000 Genomes

Gene

Exon/Intron

Mutation

Protein

N and (%)

(%)

 

(A) Pancreatic secretion and ion homeostasis

 

TMPRSS15

14

c.1622A > G

p.Asn541Ser

2 (1.2)

0

 

14

c.1633A > T

p.Ser545Cys

1 (0.6)

0.055

 

16

c.1858G > C

p.Asp620Hisa

1 (0.6)

NA

 

21

c.2483A > G

p.Tyr828Cys

1 (0.6)

0.004

 

23

c.2738C > T

p.Ala913Val

1 (0.6)

0.049

 

25

c.2960G > A

p.Gly987Aspa

1 (0.6)

NA

SLC26A3

19

c.2169G > C

p.Lys723Asn

1 (0.6)

0.001

 

16

c.1711G > A

p.Arg571Hisa

1 (0.6)

NA

SLC4A4

9

c.976A > G

p.Ile326Vala

1 (0.6)

NA

 

18

c.2179C > T

p.Pro727Ser

3 (1.9)

0

CPB1

6

c.559C > T

p.Gln187Ter

1 (0.6)

0.001

 

11

c.1246C > T

p.Arg395Trpa

1 (0.6)

NA

 

11

c.1207C > G

p.Leu403Val

1 (0.6)

0

F2RL1

2

c.734C > T

p.Ser245Phe

1 (0.6)

0

SLC4A2

10

c.1412G > A

p.Gly471Glua

1 (0.6)

NA

RAB27B

4

c.274G > A

p.Ala92Thr

1 (0.6)

0.002

PPY

3

c.236G > A

p.Trp79Stopa

1 (0.6)

NA

CLPS

4

c.203G > A

p.Arg68His

1 (0.6)

0

 

(B) Autophagy

 

HSP90AA1

6

c.1202A > T

p.Lys401Met

1 (0.6)

0.001

LAMP2

6

c.755T > G

p.Ile252Ser

1 (0.6)

0

MAP1LC3B

2

c.73G > C

p.Glu25Gln

1 (0.6)

0.003

 

(C) Autoimmune pancreatitis-related genes

 

CA4

8

c.761A > C

p.Gln254Pro

1 (0.6)

0

 

8

c.923C > A

p.Ala308Asp

1 (0.6)

0.001

ABCF1

16

c.1564G > A

p.Asp552Asna

1 (0.6)

NA

  1. aNovel mutations identified in this study whose frequencies are not available (NA) in 1000 Genomes Project. All listed variants were found in the heterozygous status.