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Table 3 TCR Vβ18 sequences of CD8+ T cells of breast cancer patients

From: Oligoclonality of CD8+ T Cells in Breast Cancer Patients

Patient (PBMC)

V β18

NDN

J

C

CDR3 length

H.H.

CASS

SRTSGGQG

DTQY FGPGTRLTVL (2.3)

ED

13 aaa

V.V.

CASS

PPGLSD

TEAF FGQGTRLTVV (1.1)

ED

11 aaa

M.T.

CASS

PSLGRD

EQY FGPGTRLTVT (2.7)

ED

10 aaa

P.V.

CASSP

PLGF

TEAF FGQGTRLTVV (1.1)

ED

10 aab

H.E.

CASSP

RGYYD

IQY FGAGTRLSVL (2.4)

ED

10 aaa

J.W.

CASS

VGEG

TEAF FGQGTRLTVT (1.1)

ED

9 aaa

I.D.

CASSP

WPSG

TQY FGPGTRLTVL (2.3)

ED

11 aaa

M.T.

CASS

PSLGRD

EQY FGPGTRLTVT (2.7)

ED

10 aaa

P.V.

CASSP

PAGT

EQF FGPGTRLTVL (2.1)

ED

9 aab

  1. aSequence obtained by directly sequencing DNA fragments eluted from those domiant CDR3 bands on acrylamide gel.
  2. bSequence obtained by bacterial cloning method. cDNA fragment for each TCR Vβ gene family was synthesized and cloned according to the procedures described in Materials and Methods. More than 20 clones were picked and sequenced. The sequence obtained from more than 50% of all clones was designated the dominant sequence.